Ontology http://www.cs.man.ac.uk/~horrocks/Ontologies/tambis.daml
Link
http://www.cs.man.ac.uk/~horrocks/Ontologies/tambis.daml (hyperdaml) (dumpont)
Description
An ontology of molecular biology and the questions that can be
performed on the resources containing data about molecular biology
Point of Contact
Ian Horrocks of University of Manchester
Submitter
Ian Horrocks of University of Manchester
Submission Date
2000-12-18
Keywords
bioinformatics
molecular biology
http://dmoz.org/Science/Biology/Bioinformatics/
Classes
accession-number
acetylation-site
acid-anhydride-hydrolysis
actin-binding
active-site
acyl-group
acyl-transfer
aldehyde-transfer
alkali-metal
alkyl-transfer
alpha-helix
amidation-site
amide
amino-acid
amino-transfer
angstrom
anion
anti-codon
anticoagulant
apoptosis-inhibitor
astatine
atom
author-name
authored-chapter
beta-sheet
binding
binding-site
biological-classification
biological-compartment
biological-function
biological-organisation
biological-process
biological-space
biological-structure
book
book-title
bromine
cadmium
calcium
calcium-binding-site
carbohydrate
carbon
carbon-carbon-bond
carbon-carbon-bond-formation
carbon-carbon-bond-hydrolysis
carbon-carbon-lysis
carbon-halide-bond
carbon-halide-lysis
carbon-nitrogen-bond
carbon-nitrogen-bond-formation
carbon-nitrogen-bond-hydrolysis
carbon-nitrogen-lysis
carbon-oxygen-bond
carbon-oxygen-bond-formation
carbon-oxygen-lysis
carbon-phosphorus-bond
carbon-phosphorus-bond-hydrolysis
carbon-sulfur-bond
carbon-sulfur-bond-formation
carbon-sulfur-lysis
carbon-sulphur-bond
carboxyl
carboxylation-site
cation
cell
cell-adhesion
cell-cycle-regulator
cell-membrane
cellular-part
cesium
chaperone
chemical
chemical-bond
chemical-part
chemical-structure
chlorine
chloroplast
chloroplast-chromosome
chloroplast-compartment
chloroplast-dna
chloroplast-membrane
chromosome
cis-trans-isomerisation
cleavage-site
cleaved-peptide
cobalt
coenzyme
coenzyme-a
coenzyme-requiring-enzyme
coenzyme-requiring-holoenzyme
cofactor
collection-book
complement-dna
compound
copper
copper-divalent-cation
covalent-bond
cytoskeletal-regulator
cytosol
cytosol-part
dalton
defenseimmunity-protein
dehydrogenation
deoxy-nucleotide
disulphide-bridge
divalent-anion
divalent-cation
dna
dna-binding-site
dna-organisation
dna-part
dna-site
dna-structure
double-stranded
double-stranded-dna
ec-number
editor-name
electrical-charge
electrostatic-bond
element
elemental-molecule
endoplasmic-reticulum
entry-identifier
enzyme
enzyme-activator
enzyme-function
enzyme-inhibitor
epimerisation
ester-bond
ester-bond-hydrolysis
ether-bond
ether-bond-hydrolysis
ethyl
eukaryote
exon
expressed-sequence-tag
extra-cellular-space
fad
farnesyl-attachment-site
flourine
formylation-site
francium
function
gene
gene-name
gene-part
gene-product
gene-promoter
genome-part
genomic-dna
geranyl-geranyl-attachment-site
glucosyl-transfer
glycosaminoglycan-substitution-site
glycosylation-site
Glycosylysis
golgi-apparatus
gpi-anchor-attachment-site
haem
halide-bond
halide-bond-hydrolysis
halogen
holoenzyme
holoprotein
hydrogen-bond
hydrolase
hydrolysis
hydrophilic
hydrophobic
hydrophobicity-property
hydroxyl
hydroxylation-site
identity
inorganic-molecular-compound
institution
inter-molecule-transfer
intra-molecular-transfer
intron
iodine
ion
ionic-compound
ionic-molecule
iron
iron-divalent-cation
isomerisation
journal
journal-article
journal-name
label
length
length-unit
ligand
ligand-binding-or-carrier
ligand-function
ligation
lipid
lipid-attachment-site
lipid-group
lithium
lyase
lysis
macromolecular-compound
macromolecular-structure
macromolecule-part
magnesium
manganese
match-type
membrane
mental
mental-organisation
mental-structure
messenger-rna
metal
metal-binding-site
metal-ion
metalloid
methyl
methylation-site
microtubule-binding
mitochondrial-chromosome
mitochondrial-compartment
mitochondrial-dna
mitochondrial-membrane
mitochondrion
modification-site
modifier
molecular-compound
molecular-compound-structure
molecular-structure
molecular-weight
molecular_function-unknown
molecule
molybdenum
monovalent-anion
monovalent-cation
motor
myristoylation-site
n-acyl-diglyceride-attachment-site
nad
nad-requiring-oxidoreductase
name
negative
negative-charge
nickel
nonmetal
nuclear-chromosome
nuclear-dna
nucleic-acid
nucleic-acid-binding
nucleic-acid-binding-site
nucleic-acid-part
nucleotide
nucleotide-binding-site
nucleus
nucleus-part
obsolete
organelle
organic-molecular-compound
organism-classification
other-bond-lysis
oxidation
oxidation-and-reduction
oxidoreductase
oxygen
oxygenation
palmitate-attachment-site
part-of-biological-structure
part-of-physical-structure
part-of-physical-substance
peptidase
peptide
peptide-bond
peptide-bond-hydrolysis
peroxidation
phosphatase
phosphate
phosphate-transfer
phosphopantetheine-substitution-site
phosphoric-ester-bond-formation
phosphorous
phosphorus-nitrogen-bond
phosphorus-nitrogen-bond-hydrolysis
phosphorus-oxygen-bond
phosphorus-oxygen-bond-hydrolysis
phosphorus-oxygen-lysis
phosphorylation-site
physical
physical-organisation
physical-process
physical-space
physical-structure
physical-substance
physicochemical-property
physicochemical-selector
plasma-membrane
plasmid
polarity
poly-a-tail
polysaccaride
positive
positive-charge
potassium
prenyl-group
prenylation-site
process
product
prokaryote
property
prosthetic-group
protein
protein-binding-site
protein-name
protein-part
protein-primary-structure
protein-protein-homologue
protein-secondary-structure
protein-sequence
protein-structure
protein-tagging
protein-turn
published-material
publishing-institution
quarternary-structure
racemation
reaction
reaction-participant
receptor
receptor-signalling-protein
regulation
residue-number
restriction-endonuclease-site
ribo-nucleotide
ribosomal-rna
ribosomal-rna-function
ribosome
ribosome-binding-site
rna
rna-part
rubidium
sbedberg
selector
selenium
signal-transduction
similarity
single-stranded
single-stranded-dna
site
small-molecular-compound
small-nuclear-rna
small-nuclear-rna-function
small-nucleolar-rna-function
small-organic-molecular-compound
sodium
species
spliceosome
storage-protein
strandedness-selector
structural-protein
structure
substance
substrate
sulphation-site
sulphur
sulphur-group
sulphur-nitrogen-bond
sulphur-nitrogen-bond-hydrolysis
sulphur-sulphur-bond
sulphur-sulphur-bond-hydrolysis
tertiary-structure
thioester-bond
thioether-bond
three-dimensional-space
time-unit
transcription
transcription-factor-binding
transfer-rna
transfer-rna-function
transmembrane-helix
transporter
trivalent-cation
tumor-suppressor
tungsten
two-component-response-regulator
two-component-sensor-molecule
unit
van-der-waals-bond
vanadium
weight-unit
work
work-title
year
zinc
zinc-divalent-cation
_anon0
_anon1036
_anon1065
_anon1067
_anon1070
_anon1073
_anon1075
_anon1087
_anon1107
_anon1110
_anon1124
_anon1128
_anon113
_anon116
_anon1166
_anon1170
_anon1179
_anon1182
_anon1199
_anon1215
_anon1225
_anon1260
_anon1265
_anon127
_anon1280
_anon1284
_anon1289
_anon1294
_anon1296
_anon1303
_anon1305
_anon1312
_anon1314
_anon1323
_anon1325
_anon1334
_anon1336
_anon1351
_anon1355
_anon1359
_anon1363
_anon1367
_anon1369
_anon1376
_anon1378
_anon138
_anon1385
_anon1387
_anon1392
_anon1399
_anon1401
_anon1410
_anon1412
_anon1417
_anon1424
_anon1431
_anon1433
_anon1436
_anon1442
_anon1448
_anon1452
_anon1454
_anon1457
_anon1463
_anon1469
_anon1471
_anon1480
_anon1484
_anon1486
_anon1489
_anon1495
_anon1501
_anon1503
_anon1510
_anon1512
_anon1519
_anon1521
_anon153
_anon188
_anon191
_anon231
_anon236
_anon249
_anon264
_anon271
_anon278
_anon283
_anon299
_anon302
_anon320
_anon321
_anon337
_anon349
_anon354
_anon356
_anon361
_anon371
_anon378
_anon381
_anon389
_anon404
_anon435
_anon448
_anon457
_anon460
_anon472
_anon497
_anon5
_anon50
_anon502
_anon505
_anon518
_anon526
_anon528
_anon540
_anon573
_anon598
_anon630
_anon636
_anon639
_anon642
_anon697
_anon715
_anon718
_anon721
_anon727
_anon735
_anon738
_anon750
_anon757
_anon764
_anon767
_anon813
_anon816
_anon825
_anon832
_anon85
_anon873
_anon880
_anon901
_anon903
_anon914
_anon920
_anon923
_anon958
_anon96
_anon967
_anon970
Properties
accession-number-of
atom-type
atomic-number
author-of
binds
binds-loosely
binds-strongly
bound-by
bound-to
boundary-of
catalysed-by
catalyses
cited-in
cites
classification-of
coded-by
codes-for
contained-in
contains
ec-number-of
editor-of
entry-id-of
expressed-by
expresses
function-indicated
function-of
has-accession-number
has-author
has-bond
has-book-title
has-bound
has-boundary
has-charge
has-classification
has-ec-number
has-editor
has-entry-id
has-function
has-journal-name
has-label
has-length
has-location
has-match-level
has-metal-class
has-molecular-weight
has-name
has-organism-classification
has-part
has-polarity
has-product
has-publication-year
has-publisher
has-secondary-structure
has-sequence
has-species
has-structure
has-substrate
has-title
has-unit
homologous-to
hydrolysed-by
hydrolysis-of
indicates-function
initiated-by
initiates
is-publication-year-of
label-of
length-of
location-of
loosely-bound-by
lysed-by
lysis-of
match-level-of
metal-class-of
molecular-weight-of
name-of
number-of-atoms
organism-classification-of
part-of
passed-through-by
passes-through
polymer-of
published-by
reverse-transcribed-from
secondary-structure-of
sequence-of
species-of
strandedness
strongly-bound-by
structure-of
takes-part-in
target-for
targets
title-of
transcribed-from
transcribed-to
transformed-by
transforms
translated-from
translated-to
Namespaces Used
http://www.daml.org/2000/11/daml-ont
http://www.w3.org/1999/02/22-rdf-syntax-ns
http://www.w3.org/2000/01/rdf-schema
Funding Source
Other: UK BBSRC/EPSRC Bioinformatics programme and
Zeneca Pharmaceuticals
Notes
See tambis project:
http://img.cs.man.ac.uk/tambis/index.html